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Boston University Superfund Research Program

2006 Publications

Allan, L. L., Schlezinger, J. J., Shansab, M., & Sherr, D. H. (2006). CYP1A1 in polycyclic aromatic hydrocarbon-induced B lymphocyte growth suppression. Biochemical and Biophysical Research Communications, 342(1), 227-235

Bradbury, B. D., Wilk, J. B., Aschengrau, A., & Lash, T. L. (2006). Departure from multiplicative interaction for catechol-O-methyltransferase genotype and active/passive exposure to tobacco smoke among women with breast cancer. Journal of Carcinogenesis, 5:3. PMCID: PMC1373621.

Brody, J. G., Aschengrau, A., McKelvey, W., Swartz, C. H., Kennedy, T., & Rudel, R. A. (2006). Breast cancer risk and drinking water contaminated by wastewater: a case-control study. Environmental Health, 5:28. PMCID: PMC1622744.

Chang, T. K. H., Crespi, C. L., & Waxman, D. J. (2006). Spectrophotometric analysis of human CYP2E1-catalyzed p-nitrophenol hydroxylation. In I. R. Phillips & E. A. Shephard (Eds.), Methods in molecular biology: Cytochrome P450 protocols (2nd ed.) (vol. 320) (pp. 127-131).

Chang, T. K. H., & Waxman, D. J. (2006). Catalytic assays for human cytochrome P450. In I. R. Phillips & E. A. Shephard (Eds.), Methods in molecular biology: Cytochrome P450 protocols (2nd ed.) (vol. 320) (pp. 78-83).

Chang, T. K. H., & Waxman, D. J. (2006). Enzymatic analysis of cDNA-expressed human CYP1A1, CYP1A2 and CYP1B1 with 7-ethoxyresorufin as substrate. In I. R. Phillips & E. A. Shephard (Eds.), Methods in molecular biology: Cytochrome P450 protocols (2nd ed.) (vol. 320) (pp. 85-90).

Chang, T. K. H., & Waxman. D. J. (2006). Synthetic drugs and natural products as modulators of constitutive androstane receptor (CAR) and pregnane X receptor (PXR). Drug Metabolism Reviews 38(1&2), 51-73.

Clodfelter, K.,H., Minita G. H., Hodor, P., Park, S.-H., Ray, W. J., & Waxman, D. J. (2006). Sex-dependent liver gene expression is extensive and largely dependent upon STAT5b: STAT5b-dependent activation of male genes and repression of female genes revealed by microarray analysis. Molecular Endocrinology, 20, 1333-1351.

Clodfelter, K. H., Waxman, D. J., & Vajda, S. Computational solvent mapping reveals the importance of local conformational changes for broad substrate specificity in mammalian cytochromes P450. Biochemistry, 45(31), 9393-9407

Crespi, C. L., Chang, T. K. H., & Waxman, D. J. (2006). CYP2D6-dependent bufuralol 1'-hydroxylation assayed by reversed-phase ion-pair high performance liquid chromatography with fluorescence detection. In I. R. Phillips & E. A. Shephard (Eds.), Methods in molecular biology: Cytochrome P450 protocols (2nd ed.) (vol. 320) (pp. 121-125).

Dong, W., Muramoto, W., Takehana, K., Stegeman, J. J., Teraoka, H., & Hiraga, T. (2006). Oxidative stress and apoptosis induced by tributyltin in retinal neuronal cells of developing zebrafish. Japanese Journal of Veterinary Science.

Garrick, R. A., Woodin, B. R., Wilson, J. Y., Middlebrooks, B. L., & Stegeman, J. J. (2006). Cytochrome P4501A is induced in endothelial cell lines from the kidney and lung of the bottlenose dolphin, Tursiops truncatus. Aquatic Toxicology, 76(3-4), 295-305.

Goldstone, J. V., Hamdoun, A., Cole, B. J., Howard-Ashby, M., Nebert, D. W., Scally, M., Dean, M., Epel, D., Hahn, M. E., & Stegeman, J. J. (2006). The chemical defensome: Environmental sensing and response genes in the Strongylocentrotus purpuratus genome. Developmental Biology, 300, 366-384.

Goldstone, H. M. H., Stegeman, J. J. (2006). A revised evolutionary history of the CYP1A subfamily: Gene duplication, gene conversion, and positive selection. Journal of Molecular Evolution, 62, 708-717.

Goldstone, H. M. H., & Stegeman, J. J. (2006). Molecular mechanisms of 2,3,7,8-tetrachlorodibenzo-p-dioxin cardiovascular embryotoxicity. Drug Metabolism Reviews, 38(1-2), 261-289.

Hahn, M. E., & Hestermann, E. V. (2006). Receptor-mediated mechanisms of toxicity. In R. T. Di Giulio & D. E. Hinton (Eds.), The Toxicology of Fishes. London: Taylor & Francis.

Hahn, M. E., Karchner, S. I., Evans, B. R., Franks, D. G., Merson, R. R., & Lapseritis, J. M. (2006). Unexpected diversity of aryl hydrocarbon receptors in non-mammalian vertebrates: Insights from comparative genomics. Journal of Experimental Zoology, 305(9), 693-706.

Kaya, T., Mohr, S. C., Waxman, D. J., & Vajda, S. (2006). Computational screening of Phthalate Monoesters for binding to PPARγ.Chemical Research in Toxicology, 19(8), 999-1009.

Kitana, N., Khonsue, W., Won, S. J., Lance, V. A., & Callard, I. P. (2006). Gonadotropin and estrogen responses in the freshwater turtle, (Chrysemys picta) from Cape Cod, Massachusetts. General and Comparative Endocrinology, 149(1), 49-57.

Kubota, A., Iwata, H., Goldstone, H. M. H., Kim, E.-Y., Stegeman, J. J., & Tanabe, S. (2006). Cytochrome P450 1A4 and 1A5 in Common Cormorant (Phalacrocorax carbo): Evolutionary relationships and functional implications associated with dioxin and related compounds. Toxicological Sciences, 92(2), 394-408.

Landon, M. R., Lancia, D. R., Jr., Clodfelter, K. H., & Vajda, S. (2006). Clustering of domains of functionally related enzymes in the interaction database PRECISE by the generation of primary sequence patterns. Journal of Molecular Graphics and Modelling, 24(6), 426-433.

Lutton, B., & Callard, I. (2006). Evolution of reproductive-immune interactions. Integrative and Comparative Biology, 46 (6), 1060-1071

Lutton, B. V., St. George, J. P., Murrin, C. R., Fileti, L. A., & Callard. I. P. (2005). The elasmobranch ovary. In W. C. Hamlett (Ed.), Reproductive biology and phylogeny of chondrichthyes: sharks, catoids, and chimaeras (pp. 237-282). Enfield, NH: Science Publishers.

Malins, D. C., Anderson, K. M., Stegeman, J. J., Jaruga, P., Green, V. M., Gilman, N. K., & Dizdaroglu, M. (2006). Biomarkers signal contaminant effects on the organs of English sole (Parophrys vetulus) from Puget Sound. Environmental Health Perspectives, 114(6), 823-829. PMCID: PMC1480518.

Matsuo, A. Y., Woodin, B. R., Reddy, C. M., Val, A. L., & Stegeman, J. J. (2006). Humic substances and crude oil induce cytochrome P450 1A expression in the Amazonian fish species Colossoma macropomum (Tambaqui). Environmental Science and Technology, 40(8), 2851-2858.

McClusky, L. M. (2006). Stage-dependency of apoptosis and the blood-testis barrier in the dogfish shark (Squalus acanthias): Cadmium-induced changes as assessed by vital fluorescence techniques . Cell and Tissue Research, 325(3), 541-553.

Merson, R. R., Franks, D. G., Karchner, S. I., & Hahn, M. E. (2006). Development and characterization of polyclonal antibodies against the aryl hydrocarbon receptor protein family (AHR1, AHR2, and AHR repressor) of Atlantic killifish Fundulus heteroclitus. Comparative Biochemistry and Physiology Part C: Pharmacology, Toxicology and Endocrinology 142, (1-2), 85-94.

Novillo, A., Kitana, N., Won, S.-J., & Callard, I. P. (2006). Comparative environmental endocrinology, genomics and endocrine disruption. Proc. 5th Intercongress Symposium of the Asia and Oceania Society for Comparative Endocrinology (pp. 77-82).

Ozonoff, D., Pogel, A., Hannan, T. (2006). Generalized contingency tables and concept lattices. In J. Abello & G. Comode (Eds.), Discrete methods in epidemiology. DIMACS: Series in discrete mathematics and theoretical computer science (vol. 70) (pp. 93-114). Providence: American Mathematical Society.

Puinean, A. M., Labadie, P., Hill, E. M., Osada, M., Kishida, M., Nakao, R., Novillo, A., Callard, I. P., et al. (2006). Laboratory exposure to 17β- estradiol fails to induce vitellogenin and estrogen receptor gene expression in the marine invertebrate Mytilus edulis. Aquatic Toxicology, 79(4), 376-383.

Sawyer, S. J., Gerstner, K. A., & Callard, G. V. (2006). Real-time PCR analysis of cytochrome aromatase expression in zebrafish: Gene specific tissue distribution, sex differences, developmental programming and estrogen regulation. General and Comparative Endocrinology, 147(2), 108-117.

Schlezinger, J. J., Emberley, J. K., & Sherr, D. H. (2006). Activation of multiple mitogen-activated protein kinases in pro/pre-B cells by GW7845, a peroxisome proliferator-activated receptor γ agonist, and their contribution to GW7845-induced apoptosis. Toxicological Sciences, 92(2), 433-444.

Schlezinger, J. J., Struntz, W. D. J., Goldstone, J. V., & Stegeman, J. J. (2006). Uncoupling of cytochrome P450 1A and stimulation of reactive oxygen species production by co-planar polychlorinated biphenyl congeners. Aquatic Toxicology, 77(4), 422-432.

Sea Urchin Genome Sequencing Consortium. (2006). The genome of the sea urchin Strongylocentrotus purpuratus. Science, 314, 941-952.

Shipley, J. M. & Waxman, D. J. (2006). Aryl hydrocarbon receptor-independent activation of estrogen receptor-dependent transcription by 3-methycholanthrene. Toxicology and Applied Pharmacology, 213(2), 87-97.

Stavropoulos, P., Celenligil-Cetin, R., Kiani, S., Tapper, A. E., Pinnapareddy, D., & Paraskevopoulou, P. (2006). lron,bis(pyridine)bis(2-pyridinecarboxylato-N1,O2. In Encyclopedia of Reagents for Organic Synthesis (pp. 414-415). Hoboken, N. J.: John Wiley & Sons, Inc.

Stuchal, L., Kleinow, K. M., Stegeman, J. J., & James, M. O. (2006). Demethylation of the pro-estrogenic pesticide methoxychlor in liver and intestine from untreated, methoxychlor-treated and 3-MC-treated catfish (Ictalurus punctatus): Evidence for roles of CYP1 and 3A family isozymes. Drug Metabolism and Disposition, 34(6), 932-938

Tarrant, A. M., Greytak, S. R., Callard, G. V., & Hahn, M. E. (2006). Estrogen receptor-related receptors in the killifish Fundulus heteroclitus: Diversity, expression, and estrogen responsiveness. Journal of Molecular Endocrinology, 37(1), 105-120.

Teraoka, H., Urakawa, S., Nanba, S., Nagai, Y., Dong, W., Imagawa, T., Tanguay, R. L., Svoboda, K., Goldstone, H. M. H., Stegeman, J. J., et al. (2006). Muscular contractions in the zebrafish embryo are necessary to reveal thiuram-induced notochord distortions. Toxicology and Applied Pharmacology, 212, 24-34.

Verslycke, T., Goldstone, J. V., & Stegeman, J. J. (2006). Isolation and phylogeny of novel cytochrome P450 genes from tunicates (Ciona spp.): a CYP3 line in early deuterostomes? Molecular Phylogenetic Evolution, 40, 760-771.

Vieira, V., Webster, T., Weinberg, J., & Aschengrau, A. (2006). Temporal-spatial analysis of breast cancer on Upper Cape Cod, Massachusetts. Proceedings of Spatial Epidemiology Conference, London 2006. Small Area Health Statistics Unit, Imperial College, London. 111-119.

Waxman, D. J., & Chang, T. K. H. (2006). Use of 7-ethoxycoumarin to monitor multiple enzymes in the human CYP1, CYP2 and CYP3 families. In I. R. Phillips & E. A. Shephard (Eds.), Methods in molecular biology: Cytochrome P450 protocols (2nd ed.) (vol. 320) (pp. 153-156).

Webster, T. (2006). Cross-level bias in partially ecologic studies.Proceedings of Spatial Epidemiology Conference, London 2006. Small Area Health Statistics Unit, Imperial College, London. 127-132.

Webster, T., Vieira, V., Weinberg, J., & Aschengrau, A. (2006). Method for mapping population-based case-control studies using generalized additive models. International Journal of Health Geographics, 5:26. PMCID: PMC1526437.

Last Updated ( Wednesday, 14 April 2010 12:59 )

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